Is there any difference between SNPs 'AG' and 'GA' in association analyses? – bioinformatics.stackexchange.com

Is there any difference between SNPs 'AG' and 'GA' in association analyses? – bioinformatics.stackexchange.com

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I am using plink to check the association between a phenotype and the SNPs of a gene. plink says the phenotype is significantly associated with a SNP on that gene, and when I check the SNP alleles, ...

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