Why does cutadapt remove low quality bases from the ends of reads only? – bioinformatics.stackexchange.com

Why does cutadapt remove low quality bases from the ends of reads only? – bioinformatics.stackexchange.com

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I use cutadapt to remove low quality bases from my Illumina reads. The algorithm only removes low quality bases from the end until it reaches a good quality base. If there is a bad quality base beyond ...

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